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市場調查報告書

RNAi篩檢趨勢

RNA Interference Screening Trends 2014

出版商 HTStec Ltd 商品編碼 217790
出版日期 內容資訊 英文 53 Pages
商品交期: 最快1-2個工作天內
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RNAi篩檢趨勢 RNA Interference Screening Trends 2014
出版日期: 2014年10月27日 內容資訊: 英文 53 Pages
簡介

本報告針對RNA干擾(RNAi)篩檢的現狀與未來預測、對RNAi的關心度、目前企業導入社內RNAi資料庫篩選的趨勢、主要應用領域等進行分析,為您概述下列內容。

  • 摘要整理
  • 目錄
  • 調查方法
  • 受訪者詳細內容
  • 受訪者的出身地區
  • 受訪者所屬企業及組織
  • 受訪者的工作職位
  • 受訪者目前正在進行的RNAi篩選試驗
  • 受訪者的主要RNAi篩選用戶群組
  • 利用RNAi資料庫篩選的主要疾病、研究領域
  • RNAi資料庫篩選的主要應用領域
  • 偏好的RNAi篩選方法
  • RNAi篩選類型的調查結果
  • RNAi篩選檢測出來的主要結束點
  • 調查結果摘要(1)
  • 不同RNAi篩選計畫數/年度
  • RNAi篩選的完成與需求產量
  • RNAi研究所使用的各種細胞
  • 用於基因靜默研究中的不同細胞株數量
  • 最常被使用的siRNA運送(轉染)方法
  • siRNA轉染的最終檢驗數量
  • 轉染用之微孔盤格式
  • siRNA/shRNA 研究的資料庫規模(1)(2)
  • 目前RNAi篩選的主要極限
  • siRNA樣品製作和液體處理的主要障礙
  • siRNA篩檢所應用的自動化層級
  • siRNA篩檢的自動化的最重要優點
  • siRNA篩檢儀器的主要供應商
  • 已購買的siRNA篩檢儀器製造商的市佔率、其他
  • 調查結果摘要(2)
  • RNAi篩選試劑與耗材的年度預算
  • RNAi篩選試劑與耗材的市場預估
  • RNAi篩選試劑與耗材的預算明細
  • RNAi篩選試劑與耗材的市場預估詳情
  • RNAi試劑與耗材市場組成的佔有率
  • 最先想到的RNAi篩選試劑與耗材廠商(1)(2)
  • siRNA篩選試劑的主要廠商
  • RNAi試劑與耗材市場供應商市佔率
  • 偏好的基因靜默方法(RNAi vs. CRISPR)
  • 目前RNAi篩選的未滿足需求
  • 調查結果摘要(3)

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目錄

This market report summarizes the results of HTStec's industry-wide global web-based benchmarking survey on RNA interference (RNAi) screening and gene silencing carried out in October 2014.

The survey was initiated by HTStec as part of its tracking of emerging life science marketplaces and to update our previous report in siRNA screening (published September 2012).

The questionnaire was compiled to meet the needs, requirements and interests of the RNAi screening vendor community. The main objectives were to comprehensively document current practices and preferences in RNAi screening, and to understand future user requirements.

Equal emphasis was given to soliciting opinion from all areas and organisations were RNA screening and gene silencing were being undertaken.

The survey looked at RNAi screening as practiced today (2014) and in some cases as predicted for the future (2016). Specifically the following were investigated: key RNAi screening end-user groupings; key diseases or research area(s) targeting RNAi screening; main application areas of RNAi library screening; preferred approach to RNAi screening; types of RNAi screens investigated; main endpoints (readouts) monitored when undertaking RNAi screening; number of different RNAi screening projects attempted per year; level of throughput in RNAi screening projects; use of different cell types in RNAi research; number of different cell lines investigated when attempting RNAi screening; use of different siRNA delivery/transfection methods; how long after transfection are cells typically analyzed; total siRNA concentration typically used in transfections; final assay volume and main plate format for transfection; source of the majority of the siRNAs/shRNAs that make-up respondent's screening library; vendor compiled RNAi library groupings of greatest interest; species against which the majority of siRNAs/shRNAs are directed; size of libraries typically investigated in siRNA/shRNA screens; number of different gene targets silenced; total number of different siRNAs/shRNA constructs in libraries; are siRNAs for one given gene tested individually or as pools; number of siRNAs per pool; main limitations in RNAi library screening; main hurdles in siRNA sample preparation and liquid handling; extent to which automation has been applied to siRNA library screening; most important benefits of applying automation to siRNA screening; main suppliers of siRNA screening instrumentation platforms (i.e. liquid handling, sample prep and automated assay platforms); RNAi screening reagents and consumables budget and its breakdown into components purchased; vendor that first comes to mind when thinking of RNAi screening reagents and consumables; main supplier of RNAi screening reagents and consumables; average cost per single target gene screened by RNAi approaches; aspects of gene silencing where RNAi versus CRISPR approaches are most suited: and any unmet needs that exist in RNAi screening today.

The main questionnaire consisted of 29 multi-choice questions and 1 open-ended question. In addition, there were 6 questions related solely to survey demographics.

The survey collected 50 validated responses, of these 72% provided comprehensive input.

Survey responses were geographically split: 50% Europe; 26% North America; 10% Asia (excluding Japan & China); 8% Japan; 4% Rest of World; and 2% China.

Survey respondents were drawn from persons or groups interested in the gene silencing or RNAi area, and undertaking or planning future investigation of siRNA/shRNA screening.

Respondents came from 28 University/Research Institute/Government Lab/Not-for-Profit Facilities; 6 Large Pharma; 4 Biotech Companies; 3 Medium-Small Pharma; 2 Academic Screening Centers; 2 Contract Research Organizations; 2 Agrochemical/Agri-Biotech Companies; 2 Medical Schools/Hospitals/Clinics; and 1 Biopharma.

Most survey respondents had a senior job role or position which was in descending order: 10 principal investigators; 8 senior scientists/researchers; 6 section/group leaders; 6 directors; 4 professors/assistant professors; 3 research scientists/associates; 3 graduate students; 3 post-docs; 3 department heads; 2 others; 1 lab manager; and 1 vice president.

Survey results were expressed as an average of all survey respondents. In addition, where appropriate the data was fully reanalyzed after sub-division into the following 5 survey groups: 1) HTS/Phenotypic Assays; 2) Basic/Academic Research; 3) Gene/Target ID/Validation; 4) Europe; and 5) North America.

The majority of respondents were currently undertaking siRNA screening, the remainder were not undertaking routinely today, but planned future investigation.

Respondents represented the following key siRNA screening end user groupings: high throughput screening/phenotypic assays (36%); basic/academic research (34%); gene/target identification/validation (22%); clinical research (4%); and other industry/applied research (4%).

Oncology/cancer was the key disease or research area most targeted by RNAi screening.

Identification of new therapeutic targets was the main application area of RNAi screening.

The preferred approach to RNAi screening was primarily an arrayed approach.

The main type of RNAi screens investigated were loss of function screens - based on decrease or loss of a phenotype.

The main endpoints (readouts) monitored when undertaking RNAi screening were either plate-reader based monitoring of whole cell responses or high content microscopic imaging of phenotypic markers/cellular parameters.

A median of 2 to 3 different RNAi screening projects were reported undertaken today (2014).

The RNAi screening throughput achieved today was a median 100-500 wells per week.

The cell type most used today for RNAi research and screening was tumor cell lines.

A median of 2 to 3 different cell lines were investigated per gene silencing project today.

The siRNA delivery method most used today was standard chemical (lipid-mediated) transfection.

Cells were analysed for silencing a median of 72 hours after siRNA transfection.

The median total siRNA concentration used in transfection today was 10-30nM.

The final assay volume used for siRNA transfection today was a median of 25µL-50µL.

The microplate format most used for siRNA delivery (transfection) and screening today was 384-well (standard volume).

The majority of siRNAs/shRNA constructs that make up respondent's primary screening library were sourced as off-the-shelf purchases of individual siRNAs.

The vendor compiled RNAi libraries of most interest to respondents covered the entire Human Genome.

The species that the majority of siRNAs/shRNAs in respondent's libraries were directed against was Human.

The median library size investigated in siRNAs/shRNAs screens were: 500-1K gene targets silenced; representing 100-500 different siRNAs/shRNAs; nearly half of siRNAs were tested as pools with a median of 4 siRNAs per pool.

Off-target effects were ranked as what most limits work on RNAi screening today.

Optimising transfection conditions and minimising cytotoxicity were rated as the aspect of siRNA sample prep and liquid handling that most limits RNAi screening efficiency.

Only moderate to low levels of automation have been most applied to siRNA screening today.

Enhanced and more uniform transfection efficiency was rated the most important potential benefit of applying automation to siRNA screening.

The suppliers of siRNA screening instrumentation most used by respondents came mainly from Thermo Scientific/Life Technologies, PerlinElmer, Tecan and BioTek.

The median annual budget for RNAi screening reagents and consumables last year (2013) was $25K-$50K per lab per year.

A bottom-up model was developed around respondent's annual budget to estimate the global market for RNA screening reagents and consumables. In 2013 this market was estimated to be around $40M. Segmentation & CAGR estimates are given in the full report.

The breakdown of the annual RNAi screening reagents and consumables budget saw the greatest share allocated to transfection reagents and buffers.

The supplier/vendor of RNAi screening reagents and consumables that first comes into the mind of respondents was Thermo Scientific/Life Technologies.

The suppliers/vendors of RNAi screening reagents and consumables most used by respondents were Thermo Scientific/Life Technologies and GE Dharmacon.

The median cost per single target gene investigated by RNAi screening approaches was $1-$2.5.

RNAi approaches were preferred over CRISPR for most technology attributes related to gene silencing.

All Respondents feedback on any unmet needs that exist today in RNAi screening were documented.

The full report provides the data, details of the breakdown of the responses for each question, its segmentation and the estimates for the future (2016). It also highlights some interesting differences between survey groups.

Table of Contents

  • Executive Summary
  • Table Of Contents
  • Survey Methodology
  • Organisation & Response Of Survey Participants
  • Respondent's Company Or Organisational Origin
  • Respondent's Geographic Origin
  • Respondent's Job Role
  • Respondents Currently Undertaking RNAi Screening Assays
  • Respondent's Key RNAi Screening End-User Grouping
  • Key Diseases Or Research Areas Targeted With RNAi Library Screening
  • Main Application Areas For RNAi Library Screening
  • Preferred Approach To RNAi Screening
  • Main Types Of RNAi Screens Investigated
  • Main Endpoints Monitored In RNAi Screening
  • Summary Of Survey Findings (1)
  • Number Of Different RNAi Screening Projects/Year
  • RNAi Screening Throughput Achieved And Wanted
  • Use Of Different Cell Types In RNAi Research
  • Number Of Different Cell Lines Investigated For Gene Silencing
  • siRNA Delivery (Transfection) Methods Most Used
  • How Long After siRNA Transfection Are Cells Analysed For Silencing
  • Total siRNA Concentration Used In Transfections
  • Final Assay Volume For siRNA Transfection
  • Main Microplate Format Used For Transfection
  • Source Of siRNAs/shRNA Constructs That Makeup Screening Library
  • Vendor Compiled RNAi Libraries Of Greatest Interest to Respondents
  • Species Against Which The Majority Of siRNAs/shRNAs Are Directed
  • Size Of Libraries Investigated In siRNA/shRNA Screens (1)
  • Size Of Libraries Investigated In siRNA/shRNA Screens (2)
  • Main Limitations In RNAi Screening Today
  • Main Hurdles In siRNA Sample Preparation and Liquid Handling
  • Level Of Automation Applied To siRNA Screening
  • Most Important Benefits Of Applying Automation To siRNA Screening
  • Main Suppliers Of siRNA Screening Instrumentation (1)
  • Supplier Share Of siRNA Screening Instrumentation Purchased
  • Summary Of Survey Findings (2)
  • Annual Budgets For RNAi Screening Reagents & Consumables
  • Market Estimate For RNAi Screening Reagents & Consumables
  • Breakdown Of RNAi Screening Reagents & Consumables Budget
  • Breakdown Of RNAi Screening Reagents & Consumables Market Estimate
  • RNAi Reagents & Consumables Market Component Share
  • Supplier Of RNAi Screening Reagents & Consumables That First Comes To Mind (1)
  • Supplier Of RNAi Screening Reagents & Consumables That First Comes To Mind (2)
  • Main Suppliers Of siRNA Screening Reagents
  • RNAi Reagents & Consumables Market Vendor Share
  • Preferred Gene Silencing Approach (RNAi vs. CRISPR) For Desirable Attributes
  • Unmet Needs In RNAi Screening Today
  • Summary Of Survey Findings (3)
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