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與生物製劑關聯資訊相對應、可持續的IT基礎設施，支援生命科學的相關研究，使醫藥品和環境可朝向生物醫學業界和社會展開，這點非常重要。此會議歷程，活用虛擬化、數據整合、數據儲存等技術，實現高柔軟性，網羅不同種類的數據、履歷數據和即時數據、內部數據和外部數據等龐大量的數據，介紹可再利用「作為服務資訊」之數據服務基礎設施的最新動向。 10月11日 9:00 Conference Registration and Morning Coffee
為了合作的IT基礎設施 Sponsored by Geoffrey Noer, Director, Product Marketing, Panasas, Inc.
9:35 ELIXIR: A Sustainable Infrastructure for Biological Information in Europe Andrew Lyall, Ph.D., ELIXIR Project Manager, European Bioinformatics Institute It is widely accepted within Europe that a sustainable infrastructure for biological information is a prerequisite for significant progress in tackling the Grand Challenges of healthcare for an aging population, security of food supply and environmental protection. ELIXIR is a pan-European project to create such an infrastructure. The talk will describe ELIXIR, progress to date and future directions. 10:05 Same Procedure as Every Year? Etzard Stolte, Ph.D., Global Head Strategy & Architecture, R&D Informatics, F. Hoffmann La Roche AG It seems that little has been changing for many years, when it comes to the way information systems in the life sciences are developed, deployed, and managed. This presentation will attempt to provide examples of what actually has been learned, as the Life Sciences have to deal with larger and more complex data management and analysis. This high level review will focus on real systems, if they delivered what they were meant to deliver, and what, if at all, later systems could build upon. 10:35 Coffee Break - Networking with Sponsor 11:15 MIBBI: Minimum Reporting Guidelines for Bioscientists Chris Taylor, Ph.D., Senior Technical Officer, European Bioinformatics Institute The last ten years have seen significant progress in various bioscience fields towards standardized guidance for reporting public research, aiming to raise the annotation quality and utility of publicly-available bioscience data. MIBBI integrates the outputs of that (necessarily piecemeal) development, presenting users with a unified set of guidelines ‘modules’ that can easily be assembled and accessed in various forms. 11:45 FuturICT: Towards Socially Interactive ICT and Global Scale Models Paul Lukowicz, Ph.D., Professor & Chair, Embedded Systems & Pervasive Computing, University of Passau Sponsored by
12:45 Lunch for Purchase in Exhibit Hall 9 13:45 Dedicated Poster Viewing in Exhibit Hall 9
下一代排序(NGS)的數據管理和雲端 14:30 Chairperson’s Remarks 14:35 Clouds and Bioinformatics Folker Meyer, Ph.D., Computational Biologist, Institute for Genomics and Systems Biology, Argonne National Lab New clouds or infrastructure as a service (IAAS) architectures are becoming available. Bioinformatics is ideally positioned to use them, but existing applications require extensive modifications to efficiently use the new environment. I will present a use case, showing the changes made to the popular MG-RAST web service backend to allow the use of “the cloud”. Sponsored by Rolf Porsche, Ph.D., IBM Partner, Head of Pharma, Life Sciences and Healthcare, IBM IBM is currently working with leading Sequencing Centers on data management challenges posed by whole genome sequencing activities. It is shown how leading edge hardware and software solutions can be used to address the related extreme requirements. In addition, IBM Research has partnered with Roche 454 to develop a new “DNA Transistor” based sequencing technology. While the technical challenges are significant, the partners are optimistic about being able to succeed with this exciting project. This discussion will also include information on current IT infrastructure for NGS as well as discussions on HPC Clouds. 15:35 Refreshment Break - Networking with Sponsor Sponsored by Detlef Labrenz, Sales Representative, DataDirect Networks, Inc. Research often calls for collaboration among teams spread across remote locations. This discussion will describe how iRODS and DataDirect’s WOS Object Storage system work together to create a distributed private storage cloud that manages replication and data protection and a framework to manage access to the data across disparate organizations. 16:30 Sponsored Presentation (Opportunity Available) 16:45 NGS-AaaS: Next-Generation Sequencing-Annotation as a Service Robert Haines,Research Computing Services, University of Manchester Next-Generation Sequencing technologies bring genome-wide sequencing within the reach of a greater number of research labs. The $1000 genome, however, is accompanied by the $100,000 analysis. To enable labs with limited bioinformatics capability or local compute provision to benefit from NGS, we are using the commercial Amazon EC2 cloud and the open source Taverna workflow system to operate an on-demand, low cost, on-line analytics service for DNA analysis. As a case study we will present an AaaS application for understanding genetic variation between cattle breeds. 17:15 The Atlas Platform for Secure Life Science Applications in the Cloud Misha Kapushesky, Functional Genomics Team Leader, Microarray Informatic, European Bioinformatics Institute 17:45 UPPNEX - A Solution for Next Generation Sequencing Data Management and Analysis Ola Spjuth, Ph.D., Scientific Coordinator, UPPNEX; Application Expert, UPPMAX, Uppsala University Jonas Hagberg, M.Sc., Project Leader, UPPNEX; System Expert, UPPMAX, Uppsala University UPPNEX and System Expert, UPPMAX, Uppsala University UPPNEX is the Swedish national project for next-generation sequencing data management and analysis using a shared computational cluster with a parallel file system, a graphical client for end users, a web-based knowledge base, and associated system- and application experts. We here present how UPPNEX tackles the many challenges when providing solutions for scientists in the rapidly evolving NGS landscape. 18:15 Sponsored Presentation (Opportunity Available) 18:30 Interactive Breakout Discussion Groups 19:15 BIOTECHNICA EVENT NIGHT - Keynote Presentation followed by Networking Reception. Live music and dancing.
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